CDS

Accession Number TCMCG006C62485
gbkey CDS
Protein Id XP_013716138.1
Location complement(join(23333804..23333947,23334060..23334143,23334235..23334339,23334429..23334566,23334649..23334740,23334831..23334897,23335036..23335154,23335259..23335333,23335639..23335702,23335849..23335946,23336025..23336169))
Gene LOC106419843
GeneID 106419843
Organism Brassica napus

Protein

Length 376aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013860684.2
Definition endonuclease III homolog 2, chloroplastic [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAAGTAAAAGCTCTTATGATTCTCACCTCCTCCGCTCGAGCTTTTAGTGCTATGAATCGCCGGATGTACTCTACTCGATCCATCTCCGCAGAATCCCTAACTCTTCCTTCCGATTCCAATTCCAATTCCAATTCCAATTCAGAATCAGCCAATGGAGCTTCCGGGTCTGAGACTCGAGTATCACCTCTAAGGAGGAAAAGGCTAAAGCAAGAAGTTTTGGATTCAAGCAGTAGCCATAAAGAGATGTGTGGAGTATTACCAGATATAGAAGATCTTTCGTACAAGAAGACAAATGTATCTCCTAGGGAGTCAAAACTAAACTCGTATGTAAAATCAACAGAAGCTAGCACATCCGCATCGTCGTCGATCAGAACAGCAGGCAAACCACCTGAGAACTGGGAAAAGGTGCTCGAGGGTATTCGAAAAATGAGATCTCCAGAAGAAGCAACAGTTGATCCTGTTAATTGTGATAGAACCGGAAGCTTTTTACCTCCCAAGGAAAGGAGATTTTATGTTCTCATAGGAACACTACTTTCAAGTCAGACTAAAGATCACGTAACTGGTGCGGCAGTAGAACGTCTTCGTCTAAATGGCCTTCTCACTCCTGAGGCCATTGATAAAGCCGATGAATCAACCATTAGGGAATTGATTTACCCTGTCGGGTTCTATACTAGAAAGGCAACTAATGTGAAGAAAGTTGCGAAACTTTGTCTTATGAAATATAACGGTGACATTCCAAGGTCTTTGGAAGAGCTACTCTCACTTCCAGGAGTCGGTCCTAAGATTGCTCATCTGGTTTTGCATATAGCATGGGATGATGTTCAAGGGATCTGCGTAGACACACATGTGCATCGCATTTGCAATAGGCTTGGTTGGGTGACTAAACCAGGAACGAAACAGAAAACGTCTTCCCCTGAGGAAACTAGAGTAGCTCTGCAACAATGGCTTCCAAAGGAAGAATGGGTCGCTATTAACTTTCTTTTGGTAGGTTTCGGACAAAAGATATGCACACCGCTAAGACCACGCTGCGGAGTTTGTAGTATCAGTGAGCTTTGCCCTTCTGCCTTCAAAGAGACCCCAAGCAAATCATCCAAACTGAAGAAACCTATCAAAAGCAAGAAAGTTTAA
Protein:  
MKVKALMILTSSARAFSAMNRRMYSTRSISAESLTLPSDSNSNSNSNSESANGASGSETRVSPLRRKRLKQEVLDSSSSHKEMCGVLPDIEDLSYKKTNVSPRESKLNSYVKSTEASTSASSSIRTAGKPPENWEKVLEGIRKMRSPEEATVDPVNCDRTGSFLPPKERRFYVLIGTLLSSQTKDHVTGAAVERLRLNGLLTPEAIDKADESTIRELIYPVGFYTRKATNVKKVAKLCLMKYNGDIPRSLEELLSLPGVGPKIAHLVLHIAWDDVQGICVDTHVHRICNRLGWVTKPGTKQKTSSPEETRVALQQWLPKEEWVAINFLLVGFGQKICTPLRPRCGVCSISELCPSAFKETPSKSSKLKKPIKSKKV